I am not understanding your procedure. On my box joint jig for my tablesaw I set the first piece against the index key, what I think you were calling the spline. I run it over the blade and cut the first slot. I then move the piece so it straddles the index key and cut the next slot and so on until that piece is done. To cut the pins on the second piece I butt it up against the bottom edge of the first piece then proceed with straddling the index key as before. That offsets the pins and slots so that the top and bottom edges of the panels line up.
It sounds like you’re index key is slightly off in width. It doesn’t take much at all and, as you mentioned, it will compound itself as you go down the line cutting slots and pins. After only a few inches or so you will really notice how off it has gotten.
My jig rides in the miter slots on the table and is adjustable. Does yours ride in a miter slot on your router table or against your fence?If it rides on your fence you could probably get some adjustment that way.
A small adjustment on the side allows me to tighten or loosen the pins and slots to get them perfect. The jig would be a real PITA without it.
The jig sled I made with multiple fences:
![[Linked Image]](https://trapperman.com/forum/attachments/usergals/2022/12/full-272-160151-7c0ce5d2_7b9a_4e6d_b773_6d27b4ebfb26.jpeg)
This is the adjustment I use.
![[Linked Image]](https://trapperman.com/forum/attachments/usergals/2022/12/full-272-160152-bbbefb41_a2fb_44b5_abbe_c553216f85e1.jpeg)
The adjustment screw is accessed through the hole shown below. If the pins/slots are too loose I move the index key ever so slightly away from the blade. If they are too tight I make a slight adjustment towards the blade. I always use test pieces of the same thickness of the material I’ll be working with to dial it in before starting the actual project.
![[Linked Image]](https://trapperman.com/forum/attachments/usergals/2022/12/full-272-160155-0c5e8ca2_7503_45b0_964e_00f365ba6e66.jpeg)
One of the first projects I made with the new jig; a box to hold my branding iron equipment. I made it out of an old skid, LOL.
![[Linked Image]](https://trapperman.com/forum/attachments/usergals/2022/12/full-272-160156-3a302ae7_1fda_4697_a4c3_e900eeeccc7e.jpeg)